Peroxibase: the peroxidase database
WebNov 23, 2012 · The PeroxiBase is a dynamic database, constantly being updated with new tools and functions, as well as daily additions of new sequences. To be capable to … WebJul 2, 2009 · PeroxiBase: the peroxidase database. Phytochemistry 68: 1605–1611. Article CAS Google Scholar Pérez-Boada M, Ruiz-Duenas FJ, Pogni R, Basosi R, Choinowski T, Martinez MJ ...
Peroxibase: the peroxidase database
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WebJul 1, 2007 · Our database contains haem and non-haem peroxidase sequences originated from annotated or not correctly annotated sequences deposited in the main repositories … WebOct 29, 2010 · In contrast, PREX is focused on the detailed annotation of the Prxs, one type of non-heme peroxidase found in PeroxiBase. PeroxiBase organizes the Prxs into subfamilies based on broad biological function and overall sequence comparison (typical 1-Cys, typical 2-Cys, atypical 2-Cys and two different thioredoxin peroxidase subfamilies) ( …
WebThis new database will allow obtaining a global overview of the evolution the protein families and superfamilies capable of peroxidase reaction. In this rapidly growing field, there is a … WebMar 1, 2006 · PeroxiBase is a database entirely devoted to the class III plant peroxidase and accessible through a web server http://peroxidase.isb-sib.ch. An exhaustive data mining performed from various EST projects has allowed drawing up the evolution of the class III across land plants evolution. Download full-size image Keywords Database Multigenic …
WebMay 8, 2014 · Previously, a database named as PeroxiBase [ 26] was developed to archive the genes encoding peroxidases in a wide range of taxonomy. Although PeroxiBase contains fungal peroxidases, it does not specifically focus on fungi and archive genes encoding NoxR, which are known to regulate NoxA and NoxB in fungi [ 27 - 29 ]. WebWe have created a peroxidase database (http://peroxibase.isb-sib.ch) that contains all identified peroxidase-encoding sequences (about 6000 sequences in 940 organisms). They are distributed between 11 superfamilies and about 60 subfamilies. All the sequences have been individually annotated and checked.
WebMay 8, 2014 · Peroxidases (EC 1.11.1.x) are a group of oxidoreductases that catalyse the oxidation of various compounds by using peroxides. While hydrogen peroxide (H 2 O 2) is …
WebRedoxiBase: A database for ROS homeostasis regulated proteins RedoxiBase: A database for ROS homeostasis regulated proteins Authors Bruno Savelli 1 , Qiang Li 2 , Mark … together fightWebNov 23, 2012 · The PeroxiBase is a dynamic database, constantly being updated with new tools and functions, as well as daily additions of new sequences. To be capable to … together film 1971WebListeria monocytogenes lmo0983 has been identified as a putative glutathione peroxidase in the GenBank database. The purpose of the research is to confirm whether GSH-Px in L. monocytogenes is involved in the biological process of bacterial infection and the related molecular mechanisms. peoplepayers ltdWebNov 23, 2012 · The PeroxiBase is a dynamic database, constantly being updated with new tools and functions, as well as daily additions of new sequences. To be capable to continue exploring new available sequences and retrieve missing peroxidases, there was an urge for the database to evolve. together figurine by willow treeWebPeroxidases can be haem and non haem containing proteins. According to the phylogenetic trees, 13 major groups, which are subdivided in more than 60 classes, are present in the database. Other oxido-reductases contain 10 major … together festival mote parkWebThe goal of the RedoxiBase is to centralize most of the oxido-reductase superfamilies encoding sequences (see the schema below), to follow the evolution of the different … Login You need a login name in order to enter new peroxidases: if you do not have … Peroxidase and other Oxido-reductase Classes Peroxidases can be haem and … Multicriteria search Download sequence(s) in Fasta format: Download … SUPERFAMILY (genome database) Unicellular algae. AlgaeBase. Protist … Browse database / Tissue types . Tissue Type Gene expression localisation … GECA from PeroxiBase's sequences GECA is an open source software that produce … The fact that the resulting sequences are revised thoroughly increases greatly the … BLAST USAGE. Blastn: Search (the selected) nucleotide database using a … BLAST Use BLAST to compare your own sequence to the PeroxiBase. Blastn, … Ever since 2004, the PeroxiBase was a database dedicated to most of the … people pay credit cardWebOct 22, 2016 · Biotechnological applications of DyP peroxidases, such as protein engineering and cloning in heterologous hosts, require reliable bioinformatics resources that are scarce. Here, we built a database consisting of a core set of DyP peroxidases from bacteria and fungi. We selected a peroxidase sequence core set from NCBI and … together fever